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== Foundational Model of Anatomy ==
{{Infobox anatomy
| name = Foundational Model of Anatomy
| image = <!-- Image removed -->
| caption = <!-- Caption removed -->
| abbreviation = FMA
| purpose = Anatomical ontology
| website = [http://si.washington.edu/projects/fma/ FMA Project]
}}


[[File:Foundational Model of Anatomy.png|thumb|right|300px|A diagram illustrating the Foundational Model of Anatomy]]
The '''Foundational Model of Anatomy''' ('''FMA''') is a comprehensive [[ontology]] for [[anatomy|anatomical]] structures in the [[human body]]. It is designed to provide a consistent framework for the representation of anatomical knowledge and to support a wide range of applications in [[biomedical informatics]].
 
The '''Foundational Model of Anatomy''' (FMA) is a reference ontology for the domain of [[anatomy]]. It is a symbolic representation of the phenotypic structure of the human body. The FMA was developed by the Structural Informatics Group at the [[University of Washington]].


== Overview ==
== Overview ==
The FMA is a reference ontology that covers the entire domain of human anatomy. It is structured as a directed acyclic graph, where nodes represent anatomical entities and edges represent relationships between these entities. The FMA includes over 75,000 anatomical concepts and over 120,000 relationships, making it one of the most detailed anatomical ontologies available.


The FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. Its ontology takes the form of a directed acyclic graph where each node corresponds to an anatomical entity and each arc represents an anatomical relationship between two entities.
== History ==
The development of the FMA began in the late 1990s at the [[University of Washington]] under the leadership of Dr. [[Cornelius Rosse]]. The project was initiated to address the need for a comprehensive and consistent representation of anatomical knowledge that could be used in a variety of biomedical applications.


== Structure ==
== Structure ==
The FMA is organized into four main components:


The FMA is structured into four major components: Anatomical entities, Anatomical relationships, Anatomical attributes, and Anatomical transformations.
* '''Anatomical Entities''': These are the basic building blocks of the ontology, representing physical anatomical structures such as organs, tissues, and cells.
 
* '''Anatomical Relationships''': These define how anatomical entities are related to one another, such as part-whole relationships and spatial relationships.
=== Anatomical Entities ===
* '''Anatomical Attributes''': These provide additional information about anatomical entities, such as their size, shape, and function.
 
* '''Anatomical Systems''': These group related anatomical entities into larger functional units, such as the [[circulatory system]] or the [[nervous system]].
[[File:Anatomical Entities.png|thumb|right|300px|Anatomical Entities in the Foundational Model of Anatomy]]
 
Anatomical entities are the basic building blocks of the FMA. They are the objects or concepts that are represented in the ontology. These include entities such as organs, tissues, cells, and molecules.
 
=== Anatomical Relationships ===
 
Anatomical relationships are the connections between anatomical entities. They represent the ways in which entities are related to each other. These relationships can be spatial (e.g., part-of, located-in), temporal (e.g., precedes, follows), or functional (e.g., connected-to, interacts-with).
 
=== Anatomical Attributes ===
 
Anatomical attributes are properties or characteristics of anatomical entities. They include properties such as size, shape, color, and location.
 
=== Anatomical Transformations ===
 
Anatomical transformations represent changes in anatomical entities over time. These can include growth, development, aging, and disease processes.


== Applications ==
== Applications ==
The FMA is used in a variety of applications, including:


The FMA has been used in a variety of applications, including biomedical research, clinical informatics, and education. It provides a common framework for integrating and analyzing anatomical data from multiple sources.
* [[Medical education]]: Providing a structured framework for teaching anatomy.
* [[Clinical decision support]]: Enhancing the accuracy of medical diagnoses and treatment plans.
* [[Biomedical research]]: Facilitating the integration and analysis of anatomical data from different sources.


== See also ==
== See also ==
* [[Ontology (information science)]]
* [[Anatomical terminology]]
* [[SNOMED CT]]
* [[UMLS]]


* [[Anatomy Ontology]]
== External links ==
* [[Medical Subject Headings]]
* [http://si.washington.edu/projects/fma/ Official FMA Project Website]
* [[Unified Medical Language System]]
* [https://bioportal.bioontology.org/ontologies/FMA FMA on BioPortal]


== References ==
== References ==
* Rosse, C., & Mejino, J. L. V. (2003). A reference ontology for biomedical informatics: the Foundational Model of Anatomy. ''Journal of Biomedical Informatics'', 36(6), 478-500.


<references />
{{Anatomy-stub}}


[[Category:Anatomical ontologies]]
[[Category:Medical informatics]]
[[Category:Anatomy]]
[[Category:Anatomy]]
[[Category:Medical ontologies]]
[[Category:Biomedical informatics]]
[[Category:University of Washington]]
[[Category:University of Washington]]

Latest revision as of 04:29, 29 December 2024

Foundational Model of Anatomy
General Information
Latin
Greek
TA98
TA2
FMA
Details
System
Artery
Vein
Nerve
Lymphatic drainage
Precursor
Function
Identifiers
Clinical significance
Notes


The Foundational Model of Anatomy (FMA) is a comprehensive ontology for anatomical structures in the human body. It is designed to provide a consistent framework for the representation of anatomical knowledge and to support a wide range of applications in biomedical informatics.

Overview[edit]

The FMA is a reference ontology that covers the entire domain of human anatomy. It is structured as a directed acyclic graph, where nodes represent anatomical entities and edges represent relationships between these entities. The FMA includes over 75,000 anatomical concepts and over 120,000 relationships, making it one of the most detailed anatomical ontologies available.

History[edit]

The development of the FMA began in the late 1990s at the University of Washington under the leadership of Dr. Cornelius Rosse. The project was initiated to address the need for a comprehensive and consistent representation of anatomical knowledge that could be used in a variety of biomedical applications.

Structure[edit]

The FMA is organized into four main components:

  • Anatomical Entities: These are the basic building blocks of the ontology, representing physical anatomical structures such as organs, tissues, and cells.
  • Anatomical Relationships: These define how anatomical entities are related to one another, such as part-whole relationships and spatial relationships.
  • Anatomical Attributes: These provide additional information about anatomical entities, such as their size, shape, and function.
  • Anatomical Systems: These group related anatomical entities into larger functional units, such as the circulatory system or the nervous system.

Applications[edit]

The FMA is used in a variety of applications, including:

See also[edit]

External links[edit]

References[edit]

  • Rosse, C., & Mejino, J. L. V. (2003). A reference ontology for biomedical informatics: the Foundational Model of Anatomy. Journal of Biomedical Informatics, 36(6), 478-500.
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